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Experimental Synthetic Biology Assignments and
Grading
Bios 313 is an ADVANCED laboratory course and requires greater
independence than Bios 211. The experimental procedures may
be less demanding than those you performed in Bios 211, and
you write just one short paper rather than three full-length
research papers. HOWEVER, just because the experiments may
be more "cookbook" does not mean the lab requires less effort.
I place a greater emphasis on analysis, interpretation, and
presentation of data; if you keep a "sloppy" notebook and slap
a proposal together at the last minute without really understanding "why" you
did a procedure and "what" the results mean, you will be disappointed
with your final grade.
Remember, the undergraduate program is a series of steps. Keep
in mind that a level of performance that would result in a
B/B+ or sometimes even an A at the introductory level, does
not (and should not) translate into a high grade at the advanced
level.
We forgive a lot of mistakes early on but you must recall the
lessons learned from these mistakes when you conduct similar
work at an advanced level.
Additionally, the criteria we use to evaluate your performance in an advanced laboratory course are different from those we use in an introductory course.
"Fairness" in this course means everyone is evaluated on the same criteria.
Since everyone does not have the same ability, everyone does not get the same grade; this outcome is not "unfair" but rather is simply reality.
- Please read my Honor Code Policy.
- A total of 200 POINTS is available in this class.
Due dates are subject to change. Do not ask
for an individual extension to a due date because you
have a paper due, or three exams, or you lost your disk; due
dates are set so that you have plenty of time to complete your
work. Don't wait until the night before to start - there is
no penalty for starting early. Notebook pages are due at
the END of each lab session, including self-scheduled
time; the final notebook pages must be turned in with your
project proposal. Please
read the policy
concerning late assignments.
Contributions of individual assignments are as follows:
- 50 points = Project Proposal (TEAM grade)
- 50 points = Lab Notebook (graded ONCE, after the lab ends)
- 50 points = Article Presentation (one per student)
- 30 points = Laboratory Performance
(5 points per day/labs 1-4; 10 points/labs 5-8)
- 20 points = Homework Assignment: The
Registry
- The Project Proposal is 25% of your final
grade.
Remember, this presentation is a TEAM and an INDIVIDUAL
project.
Therefore, EACH of you is responsible for the ENTIRE proposal,
not just the part(s) you worked on.
Furthermore, you are expected to understand
the theory and the rationale behind the proposed experimental
procedures.
- The Lab Notebook is 25% of
your final grade.
You learned how to keep a research quality notebook in BIOS 211.
The SAME is expected of you in BIOS 313; it is YOUR responsibility
to review our guidelines for keeping a proper notebook.
We will use the BIOS 313 Notebook
Checklist to
grade your lab notebook.
- The Article Presentation is 25%
of your final grade. Each of you will present an assigned scientific
article in synthetic biology. We will use the Presentation
Evaluation Form to
grade your presentation.
- GRADING SCHEME:
- 95% & up = A+
- 90 - 95% = A
- 87 - 90% = A-
- 84 - 87% = B+
- 81 - 84% = B
- 78 - 81% = B-
- 75 - 78% = C+
- 72 - 75% = C
- 69 - 72% = C-
- 60 - 69% = D
- below 60% = F
- You will be graded against this absolute scale, NOT against your classmates.
- Grades posted on Esther are FINAL and cannot be changed.
- COMMENTS ABOUT LABORATORY PERFORMANCE:
- You will be assessed each week in the following areas:
Preparation and familiarity with procedures
Proper lab notebook (i.e., recording notes DURING experiments,
NOT writing on scrap paper and copying at the end of lab)
Ability to function independently (troubleshooting and time management)
Experimental technique
- You are expected to function as an INDEPENDENT investigator
in the lab and as a member of a TEAM with the project proposal.
Follow the experimental procedures, record the results, and analyze/interpret your findings.
While accomplishment of the laboratory goals is primarily
an individual responsibility, preparation of the Project Proposal
requires contributions from EACH team member. If a team member
does not carry his/her weight or focuses only on his/her own
work, please bring this matter
to our attention; be honest and objective (your
comments will remain confidential). A conscientious evaluation
of your peers will be appreciated and will be considered when
determining the final course grade.
- You do not necessarily EARN points for "experimental technique" by
obtaining the expected results (i.e., performing the experiment
properly); likewise, you do not necessarily LOSE points if
you don't obtain the expected results. You are evaluated on
HOW you get the results, not the results themselves.
Sometimes experiments fail, or the results don't make sense, or your findings are at odds with published studies. Because of time constraints and limited materials you may not be able to repeat the procedure in a lab course; however, you should recognize that in a research setting you would perform the experiment again.
- EXAMPLES of how to LOSE Points (this list is NOT all-inclusive):
not preparing for lab (i.e., reading the procedures as you go)
failing to follow explicit instructions in the procedures
failing to come in to complete a procedure (e.g., washing/hybridizing
slides, analyzing data)
showing up late
writing on scratch paper instead of in your notebook
staying after you've finished the procedures to write in your notebook
not using your time efficiently
using the WRONG reagents
not following lab safety rules (e.g., wearing sandals or eating/drinking
in the lab)
talking on your cell phone or the lab phone during lab
Copyright, Acknowledgements,
and Intended Use
Created by B. Beason (bbeason@rice.edu),
Rice University, 10 January 2008
Updated 4 April 2008